Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
LN-229
Primary Tissue
Brain
Tissue Diagnosis
Glioma

Attributes by original data submitter

Sample

source_name
tumorigenic adherent glioma cell line (LN229)
cell type
tumorigenic adherent glioma cell line (LN229)
chip antibody
CTCF (#3418, Cell Signaling)
treatment
Treated with CrispR Cas9 Control sgRNA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
9557518
Reads aligned (%)
98.3
Duplicates removed (%)
1.9
Number of peaks
1806 (qval < 1E-05)

hg19

Number of total reads
9557518
Reads aligned (%)
97.8
Duplicates removed (%)
2.9
Number of peaks
1921 (qval < 1E-05)

Base call quality data from DBCLS SRA